optimize_probability_of_success_parameter: Optimize the probability of success parameter
In anthony-aylward/chenimbalance: Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)
Description
Usage
Arguments
Value
Description
Minimize sse for betabinomials
Usage
1
2
3
optimize_probability_of_success_parameter(w_grad, w, prob_and_sse,
prob_choice, sse, empirical, counter, b, minN = 6, binSize = 40,
r_by = 0.1, cores = detectCores())
Arguments
w_grad
w_grad
w
w
prob_and_sse
b_and_sse
prob_choice
b_choice
empirical
empirical
counter
counter
b
overdispersion parameter
minN
minimum coverage level
binSize
approximate number of bins
r_by
r_by
cores
number of cores to use
Value
list
anthony-aylward/chenimbalance documentation built on May 17, 2019, 12:50 p.m.
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Description Usage Arguments Value
Description
Minimize sse for betabinomials
Usage
1 2 3 | optimize_probability_of_success_parameter(w_grad, w, prob_and_sse,
prob_choice, sse, empirical, counter, b, minN = 6, binSize = 40,
r_by = 0.1, cores = detectCores())
|
Arguments
w_grad |
w_grad |
w |
w |
prob_and_sse |
b_and_sse |
prob_choice |
b_choice |
empirical |
empirical |
counter |
counter |
b |
overdispersion parameter |
minN |
minimum coverage level |
binSize |
approximate number of bins |
r_by |
r_by |
cores |
number of cores to use |
Value
list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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