optimize_overdispersion_parameter: Optimize the overdispersion parameter
In anthony-aylward/chenimbalance: Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)

Minimize sse for betabinomials

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optimize_overdispersion_parameter(w_grad, w, b_and_sse, b_choice, sse,
  empirical, counter, minN = 6, p = 0.5, binSize = 40, r_by = 0.1,
  cores = detectCores())

`w_grad`	w_grad
`w`	w
`b_and_sse`	b_and_sse
`b_choice`	b_choice
`empirical`	empirical
`counter`	counter
`minN`	minimum coverage level
`p`	binomial probability of success parameter
`binSize`	approximate number of bins
`r_by`	r_by
`cores`	number of cores to use

list

anthony-aylward/chenimbalance documentation built on May 17, 2019, 12:50 p.m.

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anthony-aylward/chenimbalance
Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)

optimize_overdispersion_parameter: Optimize the overdispersion parameter
In anthony-aylward/chenimbalance: Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)

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anthony-aylward/chenimbalance Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)

optimize_overdispersion_parameter: Optimize the overdispersion parameter In anthony-aylward/chenimbalance: Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)

Description

Usage

Arguments

Value

Related to optimize_overdispersion_parameter in anthony-aylward/chenimbalance...

R Package Documentation

Browse R Packages

We want your feedback!

anthony-aylward/chenimbalance
Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)

optimize_overdispersion_parameter: Optimize the overdispersion parameter
In anthony-aylward/chenimbalance: Allelic imbalance mapping procedure from Chen et al. A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals (2016)