#===============================================================================
# data.R
#===============================================================================
#' @title SNVs associated with allele-specific binding (ASB)
#'
#' @details
#' \code{
#' ===========
#' CHANGELOG
#' ===========
#'
#' v2.1
#' --same results from v2.0, with additional columns for alternate alleles and p values from the betabinomial test
#'
#'
#' v2.0
#' --results produced from updated scripts (available under 'Scripts' section, v2.0, http://alleledb.gersteinlab.org/docs/)
#' --minor debugs in scripts
#'
#'
#' v1.0
#' --results in publication
#'
#' ---------------------------------------------------
#'
#' The columns are defined as follows:
#' 1:chr : chromosome
#' 2:start : SNV start position (0-based)
#' 3:end : SNV end position (1-based)
#' 4:TF_indiv_ASB : (in ASB) transcription factor ; individual ID (as in the 1000 Genomes Project) ; ASB
#' TF_indiv_accB : transcription factor ; individual ID (as in the 1000 Genomes Project) ; accessible SNVs related to non-ASB
#' gene_indiv_ASE : (in ASE) HGNC gene symbol or NA if not in any gene ; individual ID ; ASE
#' gene_indiv_accE: HGNC gene symbol or NA if not in any gene ; individual ID ; accessible SNVs related to non-ASE
#' 5:ref_allele : reference allele
#' 6:alt_allele : alternate allele (multiple alleles are separated by ';')
#' 7:cA : read counts for A
#' 8:cC : read counts for C
#' 9:cG : read counts for G
#' 10:cT : read counts for T
#' 11:p.betabinom : p values calculated from the betabinomial test in AlleleDB pipeline
#'
#' ** gene regions are defined in GENCODE v17.
#' }
#' @format A data frame with 8806 rows and 12 variables
#' @source \url{http://alleledb.gersteinlab.org/download/}
"asb"
#' @title SNVs that are accessible to allele-specific binding
#'
#' @details
#' \code{
#' ===========
#' CHANGELOG
#' ===========
#'
#' v2.1
#' --same results from v2.0, with additional columns for alternate alleles and p values from the betabinomial test
#'
#'
#' v2.0
#' --results produced from updated scripts (available under 'Scripts' section, v2.0, http://alleledb.gersteinlab.org/docs/)
#' --minor debugs in scripts
#'
#'
#' v1.0
#' --results in publication
#'
#' ---------------------------------------------------
#'
#' The columns are defined as follows:
#' 1:chr : chromosome
#' 2:start : SNV start position (0-based)
#' 3:end : SNV end position (1-based)
#' 4:TF_indiv_ASB : (in ASB) transcription factor ; individual ID (as in the 1000 Genomes Project) ; ASB
#' TF_indiv_accB : transcription factor ; individual ID (as in the 1000 Genomes Project) ; accessible SNVs related to non-ASB
#' gene_indiv_ASE : (in ASE) HGNC gene symbol or NA if not in any gene ; individual ID ; ASE
#' gene_indiv_accE: HGNC gene symbol or NA if not in any gene ; individual ID ; accessible SNVs related to non-ASE
#' 5:ref_allele : reference allele
#' 6:alt_allele : alternate allele (multiple alleles are separated by ';')
#' 7:cA : read counts for A
#' 8:cC : read counts for C
#' 9:cG : read counts for G
#' 10:cT : read counts for T
#' 11:p.betabinom : p values calculated from the betabinomial test in AlleleDB pipeline
#'
#' ** gene regions are defined in GENCODE v17.
#' }
#' @format A data frame with 276589 rows and 12 variables
#' @source \url{http://alleledb.gersteinlab.org/download/}
"accb"
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