splitSamples: Split samples into their own loops object
In aryeelab/diffloop: Identifying differential DNA loops from chromatin topology data
Description
Usage
Arguments
Details
Value
Examples
Description
splitSamples takes a loops object and returns a list of loops
objects where each sample populates its own loops object
Usage
1
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4
splitSamples(dlo)
## S4 method for signature 'loops'
splitSamples(dlo)
Arguments
dlo
A loops object
Details
This function splits the colData and counts slots for each sample
but makes copies of the anchors, interactions, and rowdata
Value
A list of loops objects with one sample per index.
Examples
1
2
3
4
# Updating groups from all 'group1' to meaningful designations
rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/')
load(rda)
split <- splitSamples(loops.small)
aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.
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Description Usage Arguments Details Value Examples
Description
splitSamples takes a loops object and returns a list of loops
objects where each sample populates its own loops object
Usage
1 2 3 4 | splitSamples(dlo)
## S4 method for signature 'loops'
splitSamples(dlo)
|
Arguments
dlo |
A loops object |
Details
This function splits the colData and counts slots for each sample but makes copies of the anchors, interactions, and rowdata
Value
A list of loops objects with one sample per index.
Examples
1 2 3 4 | # Updating groups from all 'group1' to meaningful designations
rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/')
load(rda)
split <- splitSamples(loops.small)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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