plotKaryogram: Karyogram-like chromosome overview

Description Usage Arguments Value

View source: R/plotting.R

Description

Plot a karyogram-like chromosome overview with read counts and CNV-state from a aneuHMM object or binned.data.

Usage

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plotKaryogram(model, both.strands = FALSE, plot.breakpoints = TRUE,
  file = NULL)

Arguments

model

A aneuHMM object or binned.data.

both.strands

If TRUE, strands will be plotted separately.

plot.breakpoints

Logical indicating whether breakpoints should be plotted.

file

A PDF file where the plot will be saved.

Value

A ggplot object or NULL if a file was specified.


ataudt/aneufinder documentation built on Nov. 21, 2018, 10:10 a.m.