plotKaryogram: Karyogram-like chromosome overview

plotKaryogramR Documentation

Karyogram-like chromosome overview

Description

Plot a karyogram-like chromosome overview with read counts and CNV-state from a aneuHMM object or binned.data.

Usage

plotKaryogram(model, both.strands = FALSE, plot.breakpoints = TRUE,
  file = NULL)

Arguments

model

A aneuHMM object or binned.data.

both.strands

If TRUE, strands will be plotted separately.

plot.breakpoints

Logical indicating whether breakpoints should be plotted.

file

A PDF file where the plot will be saved.

Value

A ggplot object or NULL if a file was specified.


ataudt/aneufinder documentation built on April 18, 2023, 4:20 a.m.