plotProfile: Read count and CNV profile

plotProfileR Documentation

Read count and CNV profile

Description

Plot a profile with read counts and CNV-state from a aneuHMM object or binned.data.

Usage

plotProfile(model, both.strands = FALSE, plot.breakpoints = FALSE,
  file = NULL, normalize.counts = NULL)

Arguments

model

A aneuHMM object or binned.data.

both.strands

If TRUE, strands will be plotted separately.

plot.breakpoints

Logical indicating whether breakpoints should be plotted.

file

A PDF file where the plot will be saved.

normalize.counts

An character giving the copy number state to which to normalize the counts, e.g. '1-somy', '2-somy' etc.

Value

A ggplot object or NULL if a file was specified.


ataudt/aneufinder documentation built on April 18, 2023, 4:20 a.m.