plotProfile: Read count and CNV profile
In ataudt/aneufinder: Analysis of Copy Number Variation in Single-Cell-Sequencing Data
plotProfile R Documentation
Read count and CNV profile
Description
Plot a profile with read counts and CNV-state from a aneuHMM object or binned.data.
Usage
plotProfile(model, both.strands = FALSE, plot.breakpoints = FALSE,
file = NULL, normalize.counts = NULL)
Arguments
model
A aneuHMM object or binned.data.
both.strands
If TRUE, strands will be plotted separately.
plot.breakpoints
Logical indicating whether breakpoints should be plotted.
file
A PDF file where the plot will be saved.
normalize.counts
An character giving the copy number state to which to normalize the counts, e.g. '1-somy', '2-somy' etc.
Value
A ggplot object or NULL if a file was specified.
ataudt/aneufinder documentation built on April 18, 2023, 4:20 a.m.
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| plotProfile | R Documentation |
Read count and CNV profile
Description
Plot a profile with read counts and CNV-state from a aneuHMM object or binned.data.
Usage
plotProfile(model, both.strands = FALSE, plot.breakpoints = FALSE,
file = NULL, normalize.counts = NULL)
Arguments
model |
A |
both.strands |
If |
plot.breakpoints |
Logical indicating whether breakpoints should be plotted. |
file |
A PDF file where the plot will be saved. |
normalize.counts |
An character giving the copy number state to which to normalize the counts, e.g. '1-somy', '2-somy' etc. |
Value
A ggplot object or NULL if a file was specified.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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