Get the IDs of models that have a certain CNV profile. The result will be
TRUE for models that overlap all specified ranges in
profile by at least one base pair with the correct state.
A list of
A named logical vector with
TRUE for all models that are concordant with the given
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## Get results from a small-cell-lung-cancer lung.folder <- system.file("extdata", "primary-lung", "hmms", package="AneuFinderData") lung.files <- list.files(lung.folder, full.names=TRUE) ## Get all files that have a 3-somy on chromosome 1 and 4-somy on chromosome 2 profile <- GRanges(seqnames=c('1','2'), ranges=IRanges(start=c(1,1), end=c(195471971,182113224)), expected.state=c('3-somy','4-somy')) ids <- subsetByCNVprofile(lung.files, profile) print(which(ids))
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