API for bahlolab/isoRelate
Identity-by-Descent Inference of Haploid Recombining Organisms
| Global functions | |
|---|---|
| AmatrixDD | Man page |
| AmatrixHD | Man page |
| AmatrixHH | Man page |
| IBDLabel | Man page |
| IBDMatrix | Man page |
| IBDTable | Man page |
| IBDparameters | Man page |
| annotation_genes | Man page |
| areColors | Man page |
| bVectorDD | Man page |
| bVectorHD | Man page |
| bVectorHH | Man page |
| calculateAlpha | Man page |
| calculateBeta | Man page |
| calculateGamma | Man page |
| calculateLogLikelihood | Man page |
| calculateMeiosis | Man page |
| calculateMissingness | Man page |
| calculatePopAlleleFreq | Man page |
| calculateScale | Man page |
| calculateViterbi | Man page |
| clusterSummary | Man page |
| emissionProbDD | Man page |
| emissionProbHD | Man page |
| emissionProbHH | Man page |
| emissionProbMissingGeno | Man page |
| genotypeErrorD | Man page |
| genotypeErrorH | Man page |
| getColourPaletteMajor | Man page |
| getColourPaletteMinor | Man page |
| getGenotypes | Man page |
| getIBDiR | Man page |
| getIBDiclusters | Man page |
| getIBDmatrix | Man page |
| getIBDparameters | Man page |
| getIBDpclusters | Man page |
| getIBDposterior | Man page |
| getIBDproportion | Man page |
| getIBDsegments | Man page |
| getIBDsummary | Man page |
| getOverlap | Man page |
| groupPairs | Man page |
| haplotypeToGenotype | Man page |
| highlight_genes | Man page |
| iRfunction | Man page |
| isolatePairs | Man page |
| merge_lists | Man page |
| my_ibd | Man page |
| plotIBDclusters | Man page |
| plotIBDiR | Man page |
| plotIBDproportions | Man page |
| plotIBDsegments | Man page |
| png_genotypes | Man page |
| png_ibd | Man page |
| png_parameters | Man page |
| png_pedmap | Man page |
| roundDecimal | Man page |
| transitionProbDD | Man page |
| transitionProbHD | Man page |
| transitionProbHH | Man page |
| trueGenotypes | Man page |
