get_peaks: Output Linkage Regions
In bahlolab/linkrvis: Visualise Output from Genetic Linkage Analysis Tools

Description Usage Arguments Details Value Examples

Given a data.frame d with 'position' and 'value' columns output those contiguous regions where 'value' > t.

1	get_peaks(d, t = 0, valcol = "lod", annot)

`d`	An object of class `partbl`, `link{npartbl}`, `link{famlod}` or `link{fampar}`. Can also be a data.frame with two numeric columns that make sense as 'position' and 'value'.
`t`	A length-one numeric vector specifying the threshold to be used.
`valcol`	A length-one character vector giving the name of the column in `d` containing the values.
`annot`	A data.frame with chr, cm and bp columns.

For objects of class partbl, link{npartbl}, link{famlod} or link{fampar}, the main data frame containing the LOD scores per marker is used.

A data.frame where each row contains summary information about contiguous regions in d where 'value' >= t. If no regions achieve the specified t, returns NULL.