fampar: MERLIN 'fampar' Object

Description Usage Arguments Details Value Examples

View source: R/fampar.R

Description

Returns an S3 object of class fampar which is basically a compact version of MERLIN's fam.par files.

Usage

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fampar(fname)

Arguments

fname

Character vector containing the fam.par file name(s) output by MERLIN.

Details

MERLIN's --perFamily option is used to output LOD scores for each family based on if parametric and/or nonparametric analyses have been specified.

The parametric analysis is specified using the option --model genetic_model.txt. For more information, see MERLIN's website: http://csg.sph.umich.edu/abecasis/merlin/index.html

Value

S3 object of class fampar, which is a list with:

Examples

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fampar_chr9 <- fampar("merlin_9_famA.par")
fampar_chr24 <- fampar(c("merlin_2_famA.par", "merlin_4_famA.par"))
fampar_all <- fampar(list.files(path = "merlin/", pattern = "par$"))

bahlolab/linkrvis documentation built on June 4, 2017, 12:13 a.m.