plot.partbl: Plot MERLIN Parametric Joint LOD Scores

In bahlolab/linkrvis: Visualise Output from Genetic Linkage Analysis Tools

Description

Plots the LOD, ALPHA and HLOD scores in MERLIN's parametric.tbl file

Usage

## S3 method for class 'partbl'
plot(partbl, vars = c("lod", "alpha", "hlod"), ylim = c(0,
  max(partbl$max_lods[c("max_lod", "max_hlod")])))

Arguments

partbl	S3 object of class partbl.
vars	Character vector indicating which variable(s) to plot. Available variables from the partbl data.frame are: "lod", "alpha" and "hlod".
ylim	Character vector of length 2 indicating the range of values to plot.

Value

ggplot object, plotting the selected variables

Examples

pt <- partbl("foo-parametric.tbl")
plot(pt)

bahlolab/linkrvis documentation built on May 11, 2019, 5:25 p.m.