Returns an S3 object of class
famlod which is basically
a compact version of MERLIN's
Character vector containing the
--perFamily option is used to output LOD scores for each family
based on if parametric and/or nonparametric analyses have been specified.
The nonparametric analysis is specified using
at least one of the options
These compute LOD scores using the Kong and Cox linear model
designated in the 'analysis' column of the file by character strings containing
'ALL' and 'pairs', respectively.
The 'plod' score is calculated using the best fitting overall model. The 'lod'
score is maximized within each family (LOD)
For more information, see MERLIN's website: http://csg.sph.umich.edu/abecasis/merlin/index.html
S3 object of class
famlod, which is a list with:
famlod: data.frame with 5 columns (chr, pos, family, analysis, lod, plod)
max_lods: data.frame with 3 columns (chr, family, max_lod, max_plod)
n_markers: data.frame with 2 columns (chr, n)
1 2 3
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