read_annot: Read HapMap2 Annotation File

Description Usage Arguments Value Examples

View source: R/read_merlin.R

Description

Read the LINKDATAGEN annotation file for MPS and Illumina SNP chip data (rev.807 Dec2013), and select only the chr, bp and cm columns. Based on the b37 build.

Usage

1
read_annot(fname)

Arguments

fname

The file name to read.

Value

data.frame with 4,031,388 rows and 3 columns: chrom (char), bp (int) and cm (double)

Examples

1
annot <- read_annot("annotHapMap2U.txt.gz")

bahlolab/linkrvis documentation built on June 4, 2017, 12:13 a.m.