plot.npartbl: Plot MERLIN Nonparametric LOD Scores

In bahlolab/linkrvis: Visualise Output from Genetic Linkage Analysis Tools

Description

Plots the LOD and ExLOD scores in MERLIN's nonparametric.tbl file

Usage

## S3 method for class 'npartbl'
plot(npartbl, vars = c("lod", "exlod"), ylim = c(0,
  max(npartbl$max_lods[c("max_lod", "max_exlod")])))

Arguments

npartbl	S3 object of class npartbl.
vars	Character vector indicating which variable(s) to plot. Available variables from the npartbl data.frame are: "lod" and "exlod".
ylim	Character vector of length 2 indicating the range of values to plot.

Value

ggplot object, plotting the selected variables

Examples

npt <- npartbl("foo-nonparametric.tbl")
plot(npt)

bahlolab/linkrvis documentation built on May 11, 2019, 5:25 p.m.