read_merlin_dat: Read MERLIN 'fam.dat'
In bahlolab/linkrvis: Visualise Output from Genetic Linkage Analysis Tools
Description
Usage
Arguments
Details
Value
Examples
Description
Read the fam.dat file generated by LDG for MERLIN
Usage
1
read_merlin_dat(fname)
Arguments
fname
The file name to read.
Details
The fam.dat file contains two columns: symbol and description.
This file is required to describe the final M + 1 columns in the fam.ped
file, where M is the number of markers used in the analysis and the last column
is the affectedness status (the first five columns are always
the same - FamID, IndID, PatID, MatID and Gender). Therefore the fam.dat
file will contain M + 1 rows.
Value
A data.frame with two columns (symbol and description) and M + 1
rows, where M is the number of markers used in the analysis and the last
row describes the phenotype of interest.
Examples
1
read_merlin_dat("merlin_13_famA.dat")
bahlolab/linkrvis documentation built on May 11, 2019, 5:25 p.m.
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Description Usage Arguments Details Value Examples
Description
Read the fam.dat file generated by LDG for MERLIN
Usage
1 | read_merlin_dat(fname)
|
Arguments
fname |
The file name to read. |
Details
The fam.dat file contains two columns: symbol and description.
This file is required to describe the final M + 1 columns in the fam.ped
file, where M is the number of markers used in the analysis and the last column
is the affectedness status (the first five columns are always
the same - FamID, IndID, PatID, MatID and Gender). Therefore the fam.dat
file will contain M + 1 rows.
Value
A data.frame with two columns (symbol and description) and M + 1
rows, where M is the number of markers used in the analysis and the last
row describes the phenotype of interest.
Examples
1 | read_merlin_dat("merlin_13_famA.dat")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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