geneInfoEns76: Different gene information based on Ensembl 76 (GRCh38)

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Different gene information based on Ensembl 76 (GRCh38)

Usage

geneInfoEns76

Format

A data frame with 62753 rows and 11 variables:

ensembl_gene_id

gene ids in Ensembl 76 (also the row.names)

gene_name

hgcn symbol

p_coding_biotype

TRUE if the gene is annotated as protein coding in Ensembl 76

evidence

if the gene has been found as a protein in human protein atlas (www.https://www.proteinatlas.org/)

description

Gene associated description

entrez_id

collated list of corresponding entrez ids

go_id

collated list of corresponding GO ids

go_desc

collated list of description of the GO ids

transcript_count

number of transcripts annotated in Ensembl 76 for each gene

nb.exons

number of possible exons for each gene

Gene.length

considered length for each gene (length of the sum of the collated exons)

Source

from several biomaRt and http://www.ensembl.org/biomart queries on Ensembl 76 which can not be done anymore on that version specifically

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.