ibm.htseq.fpkm: Gene expression for Illumina Body Map (ArrayExpress...
In barzine/barzinePhdData: Data to be used with barzinePhdR
Description
Gene expression for Illumina Body Map (ArrayExpress E-MTAB-513) mapped to Ensembl 76 (GRCh38)
and quantified with HTSeq-count and normalised with the FPKM method.
See for more details chapters 1 and 2 of Barzine, M.P PhD thesis:
Investigating Normal Human Gene Expression in Tissues
with High-throughput Transcriptomic and Proteomic data.
Usage
1
Format
A data frame with 48263 transcritps (ie rows/observations) for 16 tissues (ie columns/variables)
- Thyroid
numeric, FPKM
- Testis
numeric, FPKM
- Ovary
numeric, FPKM
- Leukocyte
numeric, FPKM
- Skeletal muscle
numeric, FPKM
- Prostate
numeric, FPKM
- Lymph node
numeric, FPKM
- Lung
numeric, FPKM
- Adipose
numeric, FPKM
- Adrenal
numeric, FPKM
- Brain
numeric, FPKM
- Breast
numeric, FPKM
- Colon
numeric, FPKM
- Kidney
numeric, FPKM
- Heart
numeric, FPKM
- Liver
numeric, FPKM
barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Gene expression for Illumina Body Map (ArrayExpress E-MTAB-513) mapped to Ensembl 76 (GRCh38) and quantified with HTSeq-count and normalised with the FPKM method. See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.
Usage
1 |
Format
A data frame with 48263 transcritps (ie rows/observations) for 16 tissues (ie columns/variables)
- Thyroid
numeric, FPKM
- Testis
numeric, FPKM
- Ovary
numeric, FPKM
- Leukocyte
numeric, FPKM
- Skeletal muscle
numeric, FPKM
- Prostate
numeric, FPKM
- Lymph node
numeric, FPKM
- Lung
numeric, FPKM
- Adipose
numeric, FPKM
- Adrenal
numeric, FPKM
- Brain
numeric, FPKM
- Breast
numeric, FPKM
- Colon
numeric, FPKM
- Kidney
numeric, FPKM
- Heart
numeric, FPKM
- Liver
numeric, FPKM
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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