kuster.ppm: Protein expression for Kuster Lab data mapped to Ensembl 76...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Protein expression for Kuster Lab data mapped to Ensembl 76 (GRCh38) and quantified with the PPM method which is essentially the same method as for the PPKM method but the last normalisation step which follows the TPM (rnaseq) method instead of the FPKM one. in the fifth chapter of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data. This dataset is the same of kuster.top3.all where the uterus samples have been pooled

Usage

kuster.ppm

Format

A data frame with 10734 proteins (ie rows/observations) for 35 tissues and body fluids (ie columns/variables)

Adrenal

numeric, PPM

Anus

numeric, PPM

Ascites

numeric, PPM

Heart

numeric, PPM

Cortex

numeric, PPM

Cervix

numeric, PPM

Colon

numeric, PPM

Earwax

numeric, PPM

Oesophagus

numeric, PPM

Gallbladder

numeric, PPM

Hair follicle

numeric, PPM

Kidney

numeric, PPM

Liver

numeric, PPM

Lung

numeric, PPM

Lymph node

numeric, PPM

Milk

numeric, PPM

Nasopharynx

numeric, PPM

Oral cavity

numeric, PPM

Ovary

numeric, PPM

Pancreas

numeric, PPM

Placenta

numeric, PPM

Prostate

numeric, PPM

Rectum

numeric, PPM

Saliva

numeric, PPM

Salivary gland

numeric, PPM

Seminal vesicle

numeric, PPM

Skin

numeric, PPM

Spleen

numeric, PPM

Stomach

numeric, PPM

Testis

numeric, PPM

Thyroid

numeric, PPM

Tonsil

numeric, PPM

Tube

numeric, PPM

Uterus

numeric, PPM

Vulva

numeric, PPM

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.