gtex.cufflinks.tpm.pooled: Gene expression for GTEx (phs000424.v4.p1) mapped to Ensembl...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Gene expression for GTEx (phs000424.v4.p1) mapped to Ensembl 76 (GRCh38) and quantified with cufflinks, normalised to FPKM before being converted to TPM. and then all the biological replicates have been aggregated based on their median value of expression. See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

gtex.cufflinks.tpm.pooled

Format

A data frame with 57002 transcritps (ie rows/observations) for 47 tissues (ie columns/variables)

Liver

numeric, TPM

Kidney

numeric, TPM

C Trans Fibroblasts

numeric, TPM

Adrenal

numeric, TPM

Coronary

numeric, TPM

Oesophagus

numeric, TPM

Testis

numeric, TPM

Stomach

numeric, TPM

Ovary

numeric, TPM

Uterus

numeric, TPM

Aorta

numeric, TPM

Spleen

numeric, TPM

Urinarybladder

numeric, TPM

Colon

numeric, TPM

Pancreas

numeric, TPM

Prostate

numeric, TPM

A Tibial

numeric, TPM

C EBV Trans Lymph

numeric, TPM

CML

numeric, TPM

Adipose

numeric, TPM

Breast

numeric, TPM

Pituitary

numeric, TPM

Vagina

numeric, TPM

Fallopian tube

numeric, TPM

Skin

numeric, TPM

Heart

numeric, TPM

Skeletal muscle

numeric, TPM

Nucleus accumbens

numeric, TPM

Lung

numeric, TPM

Frontalcortex

numeric, TPM

Whole blood

numeric, TPM

Ant cingulate cortex

numeric, TPM

Cervix

numeric, TPM

Nerve tibial

numeric, TPM

Putamen

numeric, TPM

Cerebellar Hemi

numeric, TPM

Thyroid

numeric, TPM

Small intestine

numeric, TPM

Salivary gland

numeric, TPM

Hyppocampus

numeric, TPM

Amygdala

numeric, TPM

Cerebellum

numeric, TPM

Hypothalamus

numeric, TPM

Caudate

numeric, TPM

Spinalcord

numeric, TPM

Cortex

numeric, TPM

Substancia nigra

numeric, TPM

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.