ibm.htseq.raw: Gene expression for Illumina Body Map (ArrayExpress...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Gene expression for Illumina Body Map (ArrayExpress E-MTAB-513) mapped to Ensembl 76 (GRCh38) and quantified with HTSeq-count. See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

ibm.htseq.raw

Format

A data frame with 48267 transcritps (ie rows/observations) for 16 tissues (ie columns/variables)

Thyroid

numeric, count

Testis

numeric, count

Ovary

numeric, count

Leukocyte

numeric, count

Skeletal muscle

numeric, count

Prostate

numeric, count

Lymph node

numeric, count

Lung

numeric, count

Adipose

numeric, count

Adrenal

numeric, count

Brain

numeric, count

Breast

numeric, count

Colon

numeric, count

Kidney

numeric, count

Heart

numeric, count

Liver

numeric, count

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.