pandey.ppm: Protein expression for Pandey Lab data mapped to Ensembl 76...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Protein expression for Pandey Lab data mapped to Ensembl 76 (GRCh38) and quantified with the PPM method which is essentially the same method as for the PPKM method but the last normalisation step which follows the TPM (rnaseq) method instead of the FPKM one. in the fifth chapter of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

pandey.ppm

Format

A data frame with 15245 proteins (ie rows/observations) for 30 tissues and cells (ie columns/variables)

Adrenal

numeric, PPM

B cells

numeric, PPM

CD4T cells

numeric, PPM

CD8T cells

numeric, PPM

Colon

numeric, PPM

Oesophagus

numeric, PPM

Fetal Brain

numeric, PPM

Fetal Gut

numeric, PPM

Fetal Heart

numeric, PPM

Fetal Liver

numeric, PPM

Fetal Ovary

numeric, PPM

Placenta

numeric, PPM

Fetal Testis

numeric, PPM

Frontalcortex

numeric, PPM

Gallbladder

numeric, PPM

Heart

numeric, PPM

Kidney

numeric, PPM

Liver

numeric, PPM

Lung

numeric, PPM

Monocytes

numeric, PPM

NK cells

numeric, PPM

Ovary

numeric, PPM

Pancreas

numeric, PPM

Platelets

numeric, PPM

Prostate

numeric, PPM

Rectum

numeric, PPM

Retina

numeric, PPM

Spinalcord

numeric, PPM

Testis

numeric, PPM

Urinarybladder

numeric, PPM

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.