createSpatialGrid: createSpatialGrid

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Create a spatial grid using the default method

Usage

createSpatialGrid(
  gobject,
  name = NULL,
  method = c("default"),
  sdimx_stepsize = NULL,
  sdimy_stepsize = NULL,
  sdimz_stepsize = NULL,
  minimum_padding = 1,
  return_gobject = TRUE
)

Arguments

gobject	giotto object
name	name for spatial grid
method	method to create a spatial grid
sdimx_stepsize	stepsize along the x-axis
sdimy_stepsize	stepsize along the y-axis
sdimz_stepsize	stepsize along the z-axis
minimum_padding	minimum padding on the edges
return_gobject	boolean: return giotto object (default = TRUE)

Details

Creates a spatial grid with defined x, y (and z) dimensions. The dimension units are based on the provided spatial location units.

• default method: createSpatialDefaultGrid

Value

giotto object with updated spatial grid slot

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.