decide_cluster_order: decide_cluster_order

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

creates order for clusters

Usage

decide_cluster_order(
  gobject,
  expression_values = c("normalized", "scaled", "custom"),
  genes,
  cluster_column = NULL,
  cluster_order = c("size", "correlation", "custom"),
  cluster_custom_order = NULL,
  cor_method = "pearson",
  hclust_method = "ward.D"
)

Arguments

gobject	giotto object
expression_values	expression values to use
genes	genes to use
cluster_column	name of column to use for clusters
cluster_order	method to determine cluster order
cluster_custom_order	custom order for clusters
cor_method	method for correlation
hclust_method	method for hierarchical clustering

Details

Calculates order for clusters.

Value

custom

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.