do_cell_proximity_test: do_cell_proximity_test
In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox
Description
Performs a selected differential test on subsets of a matrix
Usage
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do_cell_proximity_test(
expr_values,
select_ind,
other_ind,
diff_test = c("permutation", "limma", "t.test", "wilcox"),
mean_method = c("arithmic", "geometric"),
offset = 0.1,
n_perm = 100,
adjust_method = c("bonferroni", "BH", "holm", "hochberg", "hommel", "BY", "fdr",
"none"),
cores = 2
)
bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.
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Description
Performs a selected differential test on subsets of a matrix
Usage
1 2 3 4 5 6 7 8 9 10 11 12 | do_cell_proximity_test(
expr_values,
select_ind,
other_ind,
diff_test = c("permutation", "limma", "t.test", "wilcox"),
mean_method = c("arithmic", "geometric"),
offset = 0.1,
n_perm = 100,
adjust_method = c("bonferroni", "BH", "holm", "hochberg", "hommel", "BY", "fdr",
"none"),
cores = 2
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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