do_spatial_grid_averaging: do_spatial_grid_averaging

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

smooth gene expression over a defined spatial grid

Usage

do_spatial_grid_averaging(
  gobject,
  expression_values = c("normalized", "scaled", "custom"),
  subset_genes = NULL,
  spatial_grid_name = "spatial_grid",
  min_cells_per_grid = 4
)

Arguments

gobject	giotto object
expression_values	gene expression values to use
subset_genes	subset of genes to use
spatial_grid_name	name of spatial grid to use
min_cells_per_grid	minimum number of cells to consider a grid

Value

matrix with smoothened gene expression values based on spatial grid

Examples

    do_spatial_grid_averaging(gobject)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.