getSpatialDataset: getSpatialDataset
In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox
Description
This package will automatically download the spatial locations and
expression matrix for the chosen dataset. These files are already in the right format
to create a Giotto object.
Usage
1
2
3
4
5
getSpatialDataset(
dataset = c("ST_OB_1", "ST_OB_2", "codex_spleen", "cycif_PDAC", "starmap_3D_cortex",
"osmfish_SS_cortex", "merfish_preoptic", "seqfish_SS_cortex", "seqfish_OB"),
directory = getwd()
)
Arguments
dataset
dataset to download
directory
directory to save the data to
bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
This package will automatically download the spatial locations and expression matrix for the chosen dataset. These files are already in the right format to create a Giotto object.
Usage
1 2 3 4 5 | getSpatialDataset(
dataset = c("ST_OB_1", "ST_OB_2", "codex_spleen", "cycif_PDAC", "starmap_3D_cortex",
"osmfish_SS_cortex", "merfish_preoptic", "seqfish_SS_cortex", "seqfish_OB"),
directory = getwd()
)
|
Arguments
dataset |
dataset to download |
directory |
directory to save the data to |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.