heatmSpatialCorGenes: heatmSpatialCorGenes

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Create heatmap of spatially correlated genes

Usage

heatmSpatialCorGenes(
  gobject,
  spatCorObject,
  use_clus_name = NULL,
  show_cluster_annot = TRUE,
  show_row_dend = T,
  show_column_dend = F,
  show_row_names = F,
  show_column_names = F,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "heatmSpatialCorGenes",
  ...
)

Arguments

gobject	giotto object
spatCorObject	spatial correlation object
use_clus_name	name of clusters to visualize (from clusterSpatialCorGenes())
show_cluster_annot	show cluster annotation on top of heatmap
show_row_dend	show row dendrogram
show_column_dend	show column dendrogram
show_row_names	show row names
show_column_names	show column names
show_plot	show plot
return_plot	return ggplot object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters, see showSaveParameters
default_save_name	default save name for saving, don't change, change save_name in save_param
...	additional parameters to the Heatmap function from ComplexHeatmap

Value

Heatmap generated by ComplexHeatmap

Examples

    heatmSpatialCorGenes(gobject)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.