plotICG: plotICG

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Create barplot to visualize interaction changed genes

Usage

plotICG(
  gobject,
  cpgObject,
  source_type,
  source_markers,
  ICG_genes,
  cell_color_code = NULL,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotICG"
)

Arguments

gobject	giotto object
cpgObject	cell proximity gene score object
source_type	cell type of the source cell
source_markers	markers for the source cell type
ICG_genes	named character vector of ICG genes
cell_color_code	cell color code for the interacting cell types
show_plot	show plots
return_plot	return plotting object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters from all_plots_save_function
default_save_name	default save name for saving, don't change, change save_name in save_param

Value

plot

Examples

    plotICG(CPGscores)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.