rankSpatialCorGroups: rankSpatialCorGroups

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Rank spatial correlated clusters according to correlation structure

Usage

rankSpatialCorGroups(
  gobject,
  spatCorObject,
  use_clus_name = NULL,
  show_plot = NA,
  return_plot = FALSE,
  save_plot = NA,
  save_param = list(),
  default_save_name = "rankSpatialCorGroups"
)

Arguments

gobject	giotto object
spatCorObject	spatial correlation object
use_clus_name	name of clusters to visualize (from clusterSpatialCorGenes())
show_plot	show plot
return_plot	return ggplot object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters, see showSaveParameters
default_save_name	default save name for saving, don't change, change save_name in save_param

Value

data.table with positive (within group) and negative (outside group) scores

Examples

    rankSpatialCorGroups(gobject)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.