showPattern: showPattern

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

show patterns for 2D spatial data

Usage

showPattern(gobject, spatPatObj, ...)

Arguments

gobject	giotto object
spatPatObj	Output from detectSpatialPatterns
...	Arguments passed on to showPattern2D dimension dimension to plot trim Trim ends of the PC values. background_color background color for plot grid_border_color color for grid show_legend show legend of ggplot point_size size of points show_plot show plot return_plot return ggplot object save_plot directly save the plot [boolean] save_param list of saving parameters, see showSaveParameters default_save_name default save name for saving, don't change, change save_name in save_param

Value

ggplot

See Also

showPattern2D

Examples

    showPattern(gobject)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.