showPattern2D: showPattern2D

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

show patterns for 2D spatial data

Usage

showPattern2D(
  gobject,
  spatPatObj,
  dimension = 1,
  trim = c(0.02, 0.98),
  background_color = "white",
  grid_border_color = "grey",
  show_legend = T,
  point_size = 1,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "showPattern2D"
)

Arguments

gobject	giotto object
spatPatObj	Output from detectSpatialPatterns
dimension	dimension to plot
trim	Trim ends of the PC values.
background_color	background color for plot
grid_border_color	color for grid
show_legend	show legend of ggplot
point_size	size of points
show_plot	show plot
return_plot	return ggplot object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters, see showSaveParameters
default_save_name	default save name for saving, don't change, change save_name in save_param

Value

ggplot

Examples

    showPattern2D(gobject)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.