spatNetwDistributionsDistance: spatNetwDistributionsDistance

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

This function return histograms displaying the distance distribution for each spatial k-neighbor

Usage

spatNetwDistributionsDistance(
  gobject,
  spatial_network_name = "spatial_network",
  hist_bins = 30,
  test_distance_limit = NULL,
  ncol = 1,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "spatNetwDistributionsDistance"
)

Arguments

gobject	Giotto object
spatial_network_name	name of spatial network
hist_bins	number of binds to use for the histogram
test_distance_limit	effect of different distance threshold on k-neighbors
ncol	number of columns to visualize the histograms in
show_plot	show plot
return_plot	return ggplot object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters from all_plots_save_function
default_save_name	default save name for saving, alternatively change save_name in save_param

Value

ggplot plot

Examples

    spatNetwDistributionsDistance(gobject)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.