plotDimReductPairwise: Plot correlations between adjacent two principle components....

In beyondpie/smmtools: Single-cell multi-omics sequenceing data tools

Plot correlations between adjacent two principle components. Refer: SnapATAC plotDimReductPW

Description

Plot correlations between adjacent two principle components. Refer: SnapATAC plotDimReductPW

Usage

plotDimReductPairwise(
  smat,
  outpdf = NULL,
  ndim = 50,
  point_size = 0.5,
  point_color = "grey",
  point_shape = 19,
  point_alpha = 0.5,
  nsample = 10000,
  height = 7,
  width = 7,
  ...
)

Arguments

smat	cell by feature
outpdf	string, output of pdf file, default is NULL.
ndim	integer, max dims to plot, default is 50
point_size	double, default 0.5
point_color	string, default "grey"
point_shape	integer, default 19
point_alpha	double, default 0.5
nsample	integer, max number of random cells to use, default 10000
height	double, height of pdf, default 7
width,	double, width of pdf, default 7
...	parameters, used for plot.

Value

value returned by graphics::par()

beyondpie/smmtools documentation built on July 1, 2022, 4:33 a.m.