runLeiden: Run Leiden algorithm as graph-based clustering.

In beyondpie/smmtools: Single-cell multi-omics sequenceing data tools

Run Leiden algorithm as graph-based clustering.

Description

Run Leiden algorithm as graph-based clustering.

Usage

runLeiden(
  kmat,
  path_to_python = NULL,
  reso = 0.8,
  seed = 10,
  partitionType = "RB"
)

Arguments

kmat	sparseMatrix, KNN matrix generated by runKNN.
reso	double, resolution param in Leiden default is 0.8
seed	integer, used for Leiden
partitionType	string, used for Leiden, default is "RB"
path_to_ptyhon	string

Value

vector of factor, cluster index for cells

beyondpie/smmtools documentation built on July 1, 2022, 4:33 a.m.