snapGmat2Seurat: Conver snap object to Seurat by gmat
In beyondpie/smmtools: Single-cell multi-omics sequenceing data tools
View source: R/IntegrateATACWithRNA.R
snapGmat2Seurat R Documentation
Conver snap object to Seurat by gmat
Description
Conver snap object to Seurat by gmat
Usage
snapGmat2Seurat(
snap,
eigDims = 1:50,
assay = "GeneScore",
pcaPrefix = "SnapATAC_"
)
Arguments
snap
snap object defined in SnapATAC package
snap@gmat must be not empty; snap@smat@dmat should not be empty
eigDims
vector, used for choosing PCA components, default 1:50
assay
characters, name used in Seurat object
pcaPrefix
characters, default "SnapATAC_"
Value
Seurat object
beyondpie/smmtools documentation built on July 1, 2022, 4:33 a.m.
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View source: R/IntegrateATACWithRNA.R
| snapGmat2Seurat | R Documentation |
Conver snap object to Seurat by gmat
Description
Conver snap object to Seurat by gmat
Usage
snapGmat2Seurat( snap, eigDims = 1:50, assay = "GeneScore", pcaPrefix = "SnapATAC_" )
Arguments
snap |
snap object defined in SnapATAC package snap@gmat must be not empty; snap@smat@dmat should not be empty |
eigDims |
vector, used for choosing PCA components, default 1:50 |
assay |
characters, name used in Seurat object |
pcaPrefix |
characters, default "SnapATAC_" |
Value
Seurat object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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