SnapATAC_runDiffusionMapsExtension: Run DiffusionMaps for query cells baesd on the landmark...
In beyondpie/smmtools: Single-cell multi-omics sequenceing data tools
SnapATAC_runDiffusionMapsExtension R Documentation
Run DiffusionMaps for query cells baesd on the landmark results.
Description
Run DiffusionMaps for query cells baesd on the landmark results.
Usage
SnapATAC_runDiffusionMapsExtension(bmatLandmark, bmatQuery, mapLandmark)
Arguments
bmatLandmark
matrix, cell by feature, after binarization
bmatQuery
matrix, cell by feature, after binarization
mapLandmark
results from difusionMaps for landmark cells.
Value
list of two elements
dmat matrix, nquery cell by feature
sdev numeric vector, standard deviation for the query cells.
NOTE: when one query have all zeros, the function will not fail, but
return NaN for that query.
beyondpie/smmtools documentation built on July 1, 2022, 4:33 a.m.
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| SnapATAC_runDiffusionMapsExtension | R Documentation |
Run DiffusionMaps for query cells baesd on the landmark results.
Description
Run DiffusionMaps for query cells baesd on the landmark results.
Usage
SnapATAC_runDiffusionMapsExtension(bmatLandmark, bmatQuery, mapLandmark)
Arguments
bmatLandmark |
matrix, cell by feature, after binarization |
bmatQuery |
matrix, cell by feature, after binarization |
mapLandmark |
results from difusionMaps for landmark cells. |
Value
list of two elements
dmat matrix, nquery cell by feature
sdev numeric vector, standard deviation for the query cells. NOTE: when one query have all zeros, the function will not fail, but return NaN for that query.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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