getTileMatrix: Generate matrix of couts for each tile per cell

In beyondpie/smmtools: Single-cell multi-omics sequenceing data tools

Generate matrix of couts for each tile per cell

Description

Ref: ArchR

Usage

getTileMatrix(
  rawH5File,
  outfile,
  genome = "mm10",
  sampleName = NULL,
  barcodes = NULL,
  tileSize = 5000,
  excludeChr = c("chrM")
)

Arguments

rawH5File	string
outfile	string
genome	string, default is "mm10"
sampleName	string, default is NULL
barcodes	vector of string, no need to append sampleName, will do that in this code block
tileSize	integer, default is 5000,
excludeChr	vector of string, default is c("chrM")

Value

string, where the matrix are saved

beyondpie/smmtools documentation built on July 1, 2022, 4:33 a.m.