Draw heatmap of either raw counts or variance stabilization transformed (?) data for all samples. Write plot to PDF file.
Draw heatmap of either raw counts or variance stabilization transformed (?) data for all samples. Write plot to PDF file.
1 2 3 | bic.deseq.heatmap(cds, file = NULL, num.gns = 100, transform = FALSE)
bic.deseq.heatmap(cds, file = NULL, num.gns = 100, transform = FALSE)
|
cds |
DESeq countsDataSet object |
file |
PDF file to which heatmap should be saved (optional) |
num.gns |
Include this number of most highly expressed genes in the heatmap; Default: 100 |
transform |
logical indicating whether to transform counts; Default: FALSE |
cds |
DESeq countsDataSet object |
file |
PDF file to which heatmap should be saved (optional) |
num.gns |
Include this number of most highly expressed genes in the heatmap; Default: 100 |
transform |
logical indicating whether to transform counts; Default: FALSE |
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