bic.process.gsa.res: Format and filter results from piano::runGSA()
In bic-mskcc/bicrnaseq: MSKCC Bioinformatics Core RNASeq
Description
Usage
Arguments
Value
Description
Format and filter results from piano::runGSA()
Usage
1
2
bic.process.gsa.res(gsaRes, max.p = 0.1, fc2keep = log2(1.5),
frac2keep = 2, fcQ = T)
Arguments
gsaRes
result object from piano::runGSA()
max.p
maximum p-value to use as cutoff; Default: 0.1
fc2keep
minimum fold change
frac2keep
at least 1/frac2keep genes in set must have FC >= fc2keep
fcQ
remove gene sets that do not meet cutoffs set
Value
list of two matrices: one with up-regulated gene sets and one with down-regulated
gene sets
bic-mskcc/bicrnaseq documentation built on May 24, 2019, 3:04 a.m.
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Description Usage Arguments Value
Description
Format and filter results from piano::runGSA()
Usage
1 2 | bic.process.gsa.res(gsaRes, max.p = 0.1, fc2keep = log2(1.5),
frac2keep = 2, fcQ = T)
|
Arguments
gsaRes |
result object from piano::runGSA() |
max.p |
maximum p-value to use as cutoff; Default: 0.1 |
fc2keep |
minimum fold change |
frac2keep |
at least 1/frac2keep genes in set must have FC >= fc2keep |
fcQ |
remove gene sets that do not meet cutoffs set |
Value
list of two matrices: one with up-regulated gene sets and one with down-regulated gene sets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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