Plot distribution of reads across different genomic features like exons, introns, TSS, etc. for all samples in a project
Plot distribution of reads across different genomic features like exons, introns, TSS, etc. for all samples in a project
1 2 3 4 5 |
dat |
data frame containing merged output from multiple runs of RSeQC's read_distribution.py script, where rows are samples and columns are metrics; must contain "Samples" slot and may contain any other slots |
file |
PDF file to which plot should be saved (optional) |
stack |
logical indicating that bar chart should be stacked; Default: TRUE |
pct |
logical indicating that plot should show percentages |
col.pal |
name of color palette; must be from list of RColorBrewer palettes Default: "Set3" |
horizontal |
logical indicating that bars should be horizontal; Default: TRUE |
dat |
data frame containing merged output from multiple runs of RSeQC's read_distribution.py script, where rows are samples and columns are metrics; must contain "Samples" slot and may contain any other slots |
pct |
logical indicating that plot should show percentages |
stack |
logical indicating that bar chart should be stacked; Default: TRUE |
col.pal |
name of color palette; must be from list of RColorBrewer palettes Default: "Set3" |
file |
PDF file to which plot should be saved (optional) |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.