bic.plot.5prime3prime.bias: Plot coverage uniformity (5' and 3' bias)

In bic-mskcc/bicrnaseq: MSKCC Bioinformatics Core RNASeq

Description

Bar chart showing median CV coverage, median 5' and 3' bias, and median 5' to 3' bias for each sample.

Bar chart showing median CV coverage, median 5' and 3' bias, and median 5' to 3' bias for each sample.

Usage

bic.plot.5prime3prime.bias(dat, col.pal = "Set3", file = NULL)

bic.plot.5prime3prime.bias(dat, col.pal = "Set3", file = NULL)

Arguments

dat	data frame consisting of data from CollectRNASeqMetrics output
col.pal	name of color palette; must be from list of RColorBrewer palettes Default: "Set3"
file	PDF file to which plot should be saved (optional)
horizontal	logical indicating that bars should be horizontal; Default: TRUE
dat	data frame consisting of data from CollectRNASeqMetrics output
col.pal	name of color palette; must be from list of RColorBrewer palettes Default: "Set3"
file	PDF file to which plot should be saved (optional)

bic-mskcc/bicrnaseq documentation built on May 24, 2019, 3:04 a.m.