bic.plot.alignment.distribution: Plot distibution of alignment across different genomic...
In bic-mskcc/bicrnaseq: MSKCC Bioinformatics Core RNASeq
Description
Bar chart showing for each sample the distribution of read
alignments across ribosomal, coding, UTR, intronic and
intergenic bases
Bar chart showing for each sample the distribution of read
alignments across ribosomal, coding, UTR, intronic and
intergenic bases
Usage
1
2
3
4
5
bic.plot.alignment.distribution(dat, pct = FALSE, col.pal = "Set3",
file = NULL)
bic.plot.alignment.distribution(dat, pct = FALSE, col.pal = "Set3",
file = NULL)
Arguments
dat
data frame consisting of data from CollectRNASeqMetrics
output
pct
plot percentages
col.pal
name of color palette; must be from list of RColorBrewer palettes
Default: "Set3"
file
PDF file to which plot should be saved (optional)
horizontal
logical indicating that bars should be horizontal; Default: TRUE
dat
data frame consisting of data from CollectRNASeqMetrics
output
col.pal
name of color palette; must be from list of RColorBrewer palettes
Default: "Set3"
file
PDF file to which plot should be saved (optional)
pct
plot percentages
bic-mskcc/bicrnaseq documentation built on May 24, 2019, 3:04 a.m.
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Description
Bar chart showing for each sample the distribution of read alignments across ribosomal, coding, UTR, intronic and intergenic bases
Bar chart showing for each sample the distribution of read alignments across ribosomal, coding, UTR, intronic and intergenic bases
Usage
1 2 3 4 5 | bic.plot.alignment.distribution(dat, pct = FALSE, col.pal = "Set3",
file = NULL)
bic.plot.alignment.distribution(dat, pct = FALSE, col.pal = "Set3",
file = NULL)
|
Arguments
dat |
data frame consisting of data from CollectRNASeqMetrics output |
pct |
plot percentages |
col.pal |
name of color palette; must be from list of RColorBrewer palettes Default: "Set3" |
file |
PDF file to which plot should be saved (optional) |
horizontal |
logical indicating that bars should be horizontal; Default: TRUE |
dat |
data frame consisting of data from CollectRNASeqMetrics output |
col.pal |
name of color palette; must be from list of RColorBrewer palettes Default: "Set3" |
file |
PDF file to which plot should be saved (optional) |
pct |
plot percentages |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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