bic.hclust.samples: Plot heirachical clustering of all samples
In bic-mskcc/bicrnaseq: MSKCC Bioinformatics Core RNASeq
Description
Plot clustering of samples using the heierarchical clustering method
Plot clustering of samples using the heierarchical clustering method
Usage
1
2
3
4
5
Arguments
norm.counts
data matrix containing normalized counts, where
a column represents a sample and a row represents
a gene. may or may not contain "GeneID" and "GeneSymbol"
columns.
conds
vector of sample conditions, in same order as column names
in matrix or sample.labels; if given, nodes will be colored
according to conditions; Default: NULL
log2
logical indicating whether data is on log2 scale (Default: FALSE)
file.name
plot will be saved in this file; Default:
$PWD/counts_scaled_hclust.pdf
title
main title of plot
norm.counts
data matrix containing normalized counts, where
a column represents a sample and a row represents
a gene. may or may not contain "GeneID" and "GeneSymbol"
columns.
conds
vector of sample conditions, in same order as column names
in matrix or sample.labels; if given, nodes will be colored
according to conditions; Default: NULL
log2
logical indicating whether data is on log2 scale (Default: FALSE)
file.name
plot will be saved in this file; Default:
$PWD/counts_scaled_hclust.pdf
title
main title of plot
bic-mskcc/bicrnaseq documentation built on May 24, 2019, 3:04 a.m.
R Package Documentation
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Description
Plot clustering of samples using the heierarchical clustering method
Plot clustering of samples using the heierarchical clustering method
Usage
1 2 3 4 5 |
Arguments
norm.counts |
data matrix containing normalized counts, where a column represents a sample and a row represents a gene. may or may not contain "GeneID" and "GeneSymbol" columns. |
conds |
vector of sample conditions, in same order as column names in matrix or sample.labels; if given, nodes will be colored according to conditions; Default: NULL |
log2 |
logical indicating whether data is on log2 scale (Default: FALSE) |
file.name |
plot will be saved in this file; Default: $PWD/counts_scaled_hclust.pdf |
title |
main title of plot |
norm.counts |
data matrix containing normalized counts, where a column represents a sample and a row represents a gene. may or may not contain "GeneID" and "GeneSymbol" columns. |
conds |
vector of sample conditions, in same order as column names in matrix or sample.labels; if given, nodes will be colored according to conditions; Default: NULL |
log2 |
logical indicating whether data is on log2 scale (Default: FALSE) |
file.name |
plot will be saved in this file; Default: $PWD/counts_scaled_hclust.pdf |
title |
main title of plot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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