bic.write.deseq.results: Write results for ALL genes and for DE genes

In bic-mskcc/bicrnaseq: MSKCC Bioinformatics Core RNASeq

Description

Two files are written: One containing log2FC, adjusted p-val, mean(condA), mean(condB) for ALL genes, and one containing all of that same information for ONLY DE genes. Results are sorted by abs(log2FC) by default but may be sorted by adjusted p-val.

Usage

bic.write.deseq.results(res, file.name, orderPvalQ = FALSE)

Arguments

res	Matrix to write to file, either all.res or filtered, from bic.get.norm.deseq.counts
file.name	File to which results should be written
orderPvalQ	Logical indicating results should be sorted by pValue instead of FC

Value

Nothing. Files are written.

bic-mskcc/bicrnaseq documentation built on May 24, 2019, 3:04 a.m.