bic.get.gene.sets: Get the gene sets that meet criteria set by cut offs
In bic-mskcc/bicrnaseq: MSKCC Bioinformatics Core RNASeq
Description
Usage
Arguments
Value
Description
Get the gene sets that meet criteria set by cut offs
Usage
1
2
bic.get.gene.sets(gsaRes, gsa.tab, fc2keep = log2(1.5), frac2keep = 2,
dir = "Up")
Arguments
gsaRes
results from piano::runGSA()
gsa.tab
BIC-ified GSA results
fc2keep
minimum absolute value fold change; Default: log2(1.5)
frac2keep
at least 1/frac2keep genes in set must have FC >= fc2keep
dir
direction ["Up"|"Dn"] of the results in gsaRes
Value
filtered gsa.tab
bic-mskcc/bicrnaseq documentation built on May 24, 2019, 3:04 a.m.
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Description Usage Arguments Value
Description
Get the gene sets that meet criteria set by cut offs
Usage
1 2 | bic.get.gene.sets(gsaRes, gsa.tab, fc2keep = log2(1.5), frac2keep = 2,
dir = "Up")
|
Arguments
gsaRes |
results from |
gsa.tab |
BIC-ified GSA results |
fc2keep |
minimum absolute value fold change; Default: log2(1.5) |
frac2keep |
at least 1/frac2keep genes in set must have FC >= fc2keep |
dir |
direction ["Up"|"Dn"] of the results in gsaRes |
Value
filtered gsa.tab
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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