biobakery/MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
MMUPHin is an R package for meta-analysis tasks of microbiome cohorts. It has function interfaces for: a) covariate-controlled batch- and cohort effect adjustment, b) meta-analysis differential abundance testing, c) meta-analysis unsupervised discrete structure (clustering) discovery, and d) meta-analysis unsupervised continuous structure discovery.
Getting started
Browse package contents
Package details |
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| Author | Siyuan Ma |
| Bioconductor views | BatchEffect Metagenomics Microbiome |
| Maintainer | Siyuan MA <syma.research@gmail.com> |
| License | MIT + file LICENSE |
| Version | 1.17.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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