In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Walktrap algorithm {.tabset}

Walktrap algorithm uses random walks to find communities in the graph, and it is the default graph-based clustering method in scran.

Walktrap algorithm is not using resolutions.

r scdrake::format_used_functions("igraph::cluster_walktrap()")

res <- scdrake::generate_dimred_plots_clustering_section(
  dimred_plots_clustering_files, dimred_plots_clustering_united_files, "graph", "walktrap", fs::path_dir(report_html_file), 4
)

bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.