generate_dimred_plots_clustering_section: Generate a section of clustering dimensionality reduction...

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Generate a section of clustering dimensionality reduction plots in an RMarkdown document.

Description

The hierarchy is composed of tabsets:

• Dimred (UMAP, t-SNE, PCA)

  • Clustering parameters (resolution, k), if applicable

Usage

generate_dimred_plots_clustering_section(
  dimred_plots_clustering_files,
  dimred_plots_clustering_united_files,
  algorithm_category,
  algorithm,
  rel_start_dir,
  header_level
)

Arguments

dimred_plots_clustering_files	A tibble.
dimred_plots_clustering_united_files	A tibble.
algorithm_category, algorithm	Character vectors to filter by dimred_plots_clustering_files and dimred_plots_clustering_united_files.
rel_start_dir	A character scalar: path to HTML file in which will be links to PDF files. See the Relative links section in create_a_link().
header_level	An integer scalar: the first header level.

Value

Invisibly NULL, Markdown elements are directly printed to stdout.

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.