generate_markers_results_section: Generate a table with links to marker results.

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Generate a table with links to marker results.

Description

This function is used directly in Rmd files for its side effects (in chunks with results = "asis").

Usage

generate_markers_results_section(df, group_var, dt_order_by, base_out_dir)

Arguments

df	A dataframe-like object.
group_var	A character scalar: name of grouping variable for df.
dt_order_by	A character scalar: name of column in df to order rows by.
base_out_dir	A character scalar: path to base out dir for cluster_markers or contrasts stage. Used to determine relative paths from rendered HTML files to PDF files (marker plots, heatmaps).

Value

Invisibly NULL.

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.