View source: R/plans_common_cell_annotation.R
get_cell_annotation_subplan | R Documentation |
SingleR
Get a subplan for cell annotation via SingleR
get_cell_annotation_subplan(
sce_target_name,
sce_dimred_plots_target_name,
cell_annotation_sources,
cell_annotation_out_dir,
report_dimred_names,
dimred_plots_out_dir,
do_heatmaps_
)
sce_target_name, sce_dimred_plots_target_name |
A character scalar: name of target representing a SCE object that will be used for cell annotation or dimred plots. |
cell_annotation_sources |
A tibble with cell annotation parameters. |
cell_annotation_out_dir |
A character scalar: output directory for diagnostic plots. |
report_dimred_names |
A character vector: dimred names for plots. |
dimred_plots_out_dir |
A character scalar: output directory for dimred plots. |
do_heatmaps_ |
A logical scalar: if |
drake::drake_plan()
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